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  "Title": "Stratigraphic Data Processing and Section Plots",
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  "Description": "Data processing and generating stratigraphic sections for\nvolcanic deposits and tephrastratigraphy. Package was developed\nfor studies on Alaska volcanoes (\"av\") where stratigraphic\n(\"strat\") figures are needed for interpreting eruptive\nhistories, but the methods are applicable to any sediment\nstratigraphy project. Plotting styles inspired by \"SedLog\"\n(Zervas et al. 2009) <doi:10.1016/j.cageo.2009.02.009> but with\nmore customizable outputs and flexible data input based on best\npractice recommendations for the tephra community (Wallace et\nal. 2022) <doi:10.1038/s41597-022-01515-y>.",
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