{ "_id": "6abf494999f7aa8c6aa586af", "Package": "avstrat", "Title": "Stratigraphic Data Processing and Section Plots", "Version": "0.1.1.9001", "Authors@R": "person(\"Matthew\", \"Loewen\",\nemail = \"mloewen@usgs.gov\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5621-285X\"))", "Description": "Data processing and generating stratigraphic sections for\nvolcanic deposits and tephrastratigraphy. Package was developed\nfor studies on Alaska volcanoes (\"av\") where stratigraphic\n(\"strat\") figures are needed for interpreting eruptive\nhistories, but the methods are applicable to any sediment\nstratigraphy project. Plotting styles inspired by \"SedLog\"\n(Zervas et al. 2009) but with\nmore customizable outputs and flexible data input based on best\npractice recommendations for the tephra community (Wallace et\nal. 2022) .", "License": "CC0", "Copyright": "This software is in the public domain because it contains\nmaterials that originally came from the United States\nGeological Survey, an agency of the United States Department of\nthe Interior.", "BugReports": "https://code.usgs.gov/vsc/tephra/tools/avstrat/-/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "LazyData": "true", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nmake libicu-dev libpng-dev libuv1-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev zlib1g-dev", "Repository": "https://mwloewen.r-universe.dev", "Date/Publication": "2026-10-02 00:33:19 UTC", "RemoteUrl": "https://github.com/mwloewen/avstrat", "RemoteRef": "HEAD", "RemoteSha": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-02 05:59:50 UTC", "User": "root" }, "Author": "Matthew Loewen [aut, cre] (ORCID:\n)", "Maintainer": "Matthew Loewen ", "_user": "mwloewen", "_type": "src", "_file": "avstrat_0.1.1.9001.tar.gz", "_fileid": "https://r2.ropensci.org/1858e611bcd94a3cfc54e17b2224d8e053765632d68ed6190d11cf099b668497", "_filesize": 889455, "_sha256": "1858e611bcd94a3cfc54e17b2224d8e053765632d68ed6190d11cf099b668497", "_expires": "2027-01-10T06:03:51.000Z", "_created": "2026-10-02T05:59:50.000Z", "_published": "2026-10-02T06:03:53.537Z", "_jobs": [ { "job": 110726219913, "time": 181, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11212126468" }, { "job": 110726219889, "time": 170, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11212131288" }, { "job": 110726219915, "time": 124, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11212290429" }, { "job": 110726219952, "time": 138, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11212116432" }, { "job": 110725103137, "time": 297, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11212006946" }, { "job": 110726219958, "time": 158, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11212091716" }, { "job": 110726219896, "time": 116, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11212315316" }, { "job": 110726219916, "time": 124, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11211174722" }, { "job": 110726219920, "time": 123, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11212190947" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428", "_status": "success", "_upstream": "https://github.com/mwloewen/avstrat", "_commit": { "id": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "author": "Loewen ", "committer": "Loewen ", "message": "pipeline update\n", "time": 1790901199 }, "_maintainer": { "name": "Matthew Loewen", "email": "mloewen@usgs.gov", "login": "mwloewen", "orcid": "0000-0002-5621-285X", "description": "", "uuid": 122486226 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "ggplot2", "version": ">= 4.0", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "leaflet", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "readxl", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "mwloewen", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-41", "n": 4 }, { "week": "2025-42", "n": 12 }, { "week": "2025-43", "n": 11 }, { "week": "2025-44", "n": 9 }, { "week": "2025-45", "n": 2 }, { "week": "2025-46", "n": 3 }, { "week": "2025-47", "n": 1 }, { "week": "2025-49", "n": 2 }, { "week": "2025-50", "n": 10 }, { "week": "2025-51", "n": 1 }, { "week": "2026-04", "n": 1 }, { "week": "2026-05", "n": 5 }, { "week": "2026-06", "n": 2 }, { "week": "2026-10", "n": 1 }, { "week": "2026-39", "n": 8 }, { "week": "2026-40", "n": 5 } ], "_tags": [ { "name": "0.1.0", "date": "2026-01-27" }, { "name": "0.1.1", "date": "2026-02-04" } ], "_stars": 0, "_contributors": [ { "user": "mwloewen", "count": 98, "uuid": 122486226 } ], "_userbio": { "uuid": 122486226, "type": "user", "name": "Matt Loewen", "followers": 1 }, "_downloads": { "count": 257, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/avstrat" }, "_devurl": "https://github.com/mwloewen/avstrat", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/avstrat.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/mwloewen/avstrat", "_realowner": "mwloewen", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2026-02-04" } ], "_exports": [ "add_depths", "add_layer_width", "extract_sample_depths", "ggstrat", "ggstrat_bulk_save", "ggstrat_column", "ggstrat_label", "ggstrat_samples", "load_geodiva_forms", "load_stratdata_indiv", "run_ggstrat_app", "scale_fill_stratpal", "stratpal_grays", "stratpal_rpg", "theme_avstrat", "validate_stratpal" ], "_datasets": [ { "name": "example_data_indiv", "title": "Example stratigraphic data from individual tables", "object": "example_data_indiv", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "stratsection_name", "stratlayer_name", "stratlayer_desc", "stratlayer_order", "thickness_units", "thickness_typical", "thickness_min", "thickness_max", "depth_units", "depth_top", "depth_bottom", "layer_type", "stratlayer_color", "grainsize_top", "grainsize_bottom", "volcano_name", "station_id", "stratmeasuremethod", "stratlayer_order_start_at_top", "Latdd", "Longdd", "stratlayer_sample", "SampleID" ], "rows": 244, "table": true, "tojson": true }, { "name": "example_data_strat", "title": "Example GeoDIVA forms data", "object": "example_data_strat", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "stratsection_name", "stratlayer_name", "date_described", "date_described_timezone", "stratlayer_desc", "stratlayer_order", "thickness_units", "thickness_typical", "thickness_min", "thickness_max", "depth_units", "depth_top", "depth_bottom", "depth_uncertainty_top", "depth_uncertainty_bottom", "layer_type", "stratlayer_color", "grainsize_top", "grainsize_bottom", "stratlayer_grading", "contact_lower", "contact_upper", "stratlayer_sorting", "stratlayer_support", "tephra_concentration", "stratlayer_unit", "tephra_name", "tephra_guess", "volcano_name", "eruption_name", "stratlayer_sample", "station_id", "stratmeasuremethod", "stratlayer_order_start_at_top", "section_notes", "Latdd", "Longdd", "LocationDesc", "SampleID" ], "rows": 244, "table": true, "tojson": true } ], "_help": [ { "page": "add_depths", "title": "Add standardized depth information to stratigraphic layer data", "topics": [ "add_depths" ] }, { "page": "add_layer_width", "title": "Reformat stratigraphic layer data for polygon plotting", "topics": [ "add_layer_width" ] }, { "page": "example_data_indiv", "title": "Example stratigraphic data from individual tables", "topics": [ "example_data_indiv" ] }, { "page": "example_data_strat", "title": "Example GeoDIVA forms data", "topics": [ "example_data_strat" ] }, { "page": "extract_sample_depths", "title": "Extract unnested samples with stratigraphic depths", "topics": [ "extract_sample_depths" ] }, { "page": "ggstrat", "title": "Plot a grainsize-depth stratigraphic section", "topics": [ "ggstrat" ] }, { "page": "ggstrat_bulk_save", "title": "Bulk save stratigraphic plots for all uploaded sections", "topics": [ "ggstrat_bulk_save" ] }, { "page": "ggstrat_column", "title": "Plot a simple stratigraphic column", "topics": [ "ggstrat_column" ] }, { "page": "ggstrat_label", "title": "Plots text lables alongside a stratigraphic section", "topics": [ "ggstrat_label" ] }, { "page": "ggstrat_samples", "title": "A combined grainsize-depth and sample label stratigraphic plot", "topics": [ "ggstrat_samples" ] }, { "page": "load_geodiva_forms", "title": "Load stratigraphic data from GeoDIVA upload forms", "topics": [ "load_geodiva_forms" ] }, { "page": "load_stratdata_indiv", "title": "Load stratigraphic data from individual tables", "topics": [ "load_stratdata_indiv" ] }, { "page": "run_ggstrat_app", "title": "Launch the interactive map with stratigraphy plots", "topics": [ "run_ggstrat_app" ] }, { "page": "scale_fill_stratpal", "title": "Stratigraphic fill scale", "topics": [ "scale_fill_stratpal" ] }, { "page": "stratpalettes", "title": "Stratigraphic palettes", "topics": [ "stratpalettes", "stratpal_grays", "stratpal_rpg" ] }, { "page": "theme_avstrat", "title": "Custom theme for stratigraphic plots", "topics": [ "theme_avstrat" ] }, { "page": "validate_stratpal", "title": "Validate a stratigraphic palette", "topics": [ "validate_stratpal" ] } ], "_pkglogo": "https://github.com/mwloewen/avstrat/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/mwloewen/avstrat/raw/HEAD/README.md", "_rundeps": [ "base64enc", "bslib", "cachem", "class", "classInt", "cli", "commonmark", "cpp11", "crosstalk", "DBI", "digest", "dplyr", "e1071", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "isoband", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "later", "lattice", "lazyeval", "leaflet", "leaflet.providers", "lifecycle", "magrittr", "memoise", "mime", "otel", "patchwork", "pillar", "pkgconfig", "png", "promises", "proxy", "purrr", "R6", "rappdirs", "raster", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "s2", "S7", "sass", "scales", "sf", "shiny", "sourcetools", "sp", "stringi", "stringr", "terra", "tibble", "tidyr", "tidyselect", "tinytex", "units", "utf8", "vctrs", "viridisLite", "withr", "wk", "xfun", "xtable", "yaml" ], "_vignettes": [ { "source": "avstrat_workflow-examples.Rmd", "filename": "avstrat_workflow-examples.html", "title": "avstrat_workflow-examples", "engine": "knitr::rmarkdown", "headings": [ "Workflow examples for avstrat", "Setup", "Data import", "GeoDIVA forms", "Individual upload", "Basic plotting", "Interactive app", "Saving plots", "Conclusions" ], "created": "2025-10-24 08:15:58", "modified": "2026-02-04 20:27:27", "commits": 5 } ], "_score": 4.903089986991944, "_indexed": true, "_nocasepkg": "avstrat", "_universes": [ "mwloewen" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1.9001", "date": "2026-10-02T06:02:50.000Z", "distro": "resolute", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/5fd548e28dc42360b4882c963b7c6d22faf1885f6b31a5880b9e91de8bad9542", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1.9001", "date": "2026-10-02T06:02:42.000Z", "distro": "resolute", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/272ec9b254422b5c87448a931e8c2aae27732c28b283a5e53ec4ff73f8147b05", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1.9001", "date": "2026-10-02T06:02:06.000Z", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/f39c7b69b72399d3c43044bede0180024c72ceb50633d757f6974177e0b175fe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1.9001", "date": "2026-10-02T06:02:15.000Z", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/6882199252ddc9a444e880051f9ce57a29a6c9c4e29a5b5463d7484b206531b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1.9001", "date": "2026-10-02T06:03:01.000Z", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/f09b3a995d7329b69f1092e65643b04f88583f7da1eda9a3f920e41becc9e60b", "status": "success", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" }, { "r": "4.7.0", "os": "win", "version": "0.1.1.9001", "date": "2026-10-02T06:01:46.000Z", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/32818698accd4a30d3b565cb93a2a3822809cedc0d768b055c15555ba5966348", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" }, { "r": "4.5.3", "os": "win", "version": "0.1.1.9001", "date": "2026-10-02T06:01:47.000Z", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/38d74dbaa7692527146f671f5e7bc77abf5a4a2108cddd7c54e9a24bd46b038c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" }, { "r": "4.6.1", "os": "win", "version": "0.1.1.9001", "date": "2026-10-02T06:01:46.000Z", "commit": "fe695a52763c9b5b631eb1dc8b877e3d92a523a8", "fileid": "https://r2.ropensci.org/715fbb00fa6026340b32f16420517c88ceb21e3df414f6eb6107258bc8b9e95b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/mwloewen/actions/runs/36971049428" } ] }